omnipath.requests.SignedPTMs.get

classmethod SignedPTMs.get(ptms=None, interactions=None)

Get signs for enzyme-PTM interactions.

Parameters:

• ptms (Optional[DataFrame]) – Data generated by omnipath.requests.Enzsub.get(). If None, a new request will be performed.

• interactions (Optional[DataFrame]) – Data generated by omnipath.interactions.OmniPath.get(). If None, a new request will be performed.

Returns:

The signed PTMs with columns ‘is_inhibition’ and ‘is_stimulation’.

Return type:

pandas.DataFrame